• Scalable computing in Java with PCJ Library. Improved collective operations 

  Nowicki, Marek; Górski, Łukasz; Bała, Piotr (Sissa Medialab srl, 2021)

  Machine learning and Big Data workloads are becoming as important as traditional HPC ones. AI and Big Data users tend to use new programming languages such as Python, Julia, or Java, while the HPC community is still ...

• PCJ Java library as a solution to integrate HPC, Big Data and Artificial Intelligence workloads 

  Nowicki, Marek; Górski, Łukasz; Bała, Piotr (Springer, 2021)

  With the development of peta- and exascale size computational systems there is growing interest in running Big Data and Artificial Intelligence (AI) applications on them. Big Data and AI applications are implemented in ...

• Research Data Management in the Context of Researchers' Needs and Open Science Advancements in Poland. Overview of the Training Programme of Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw 

  Gruenpeter, Natalia (Poltechnika Gdańska, 2021-12-30)

  The article presents conclusions from research data management (RDM) trainings conducted since 2015 as part of the activities of the Open Science Platform, an initiative of the Interdisciplinary Centre for Mathematical and ...

• Biologically sound formal model of Hsp70 heat induction 

  Dudziuk, Grzegorz; Wronowska, Weronika; Gambin, Anna; Szymańska, Zuzanna; Rybiński, Mikołaj (Elsevier, 2019)

  A proper response to rapid environmental changes is essential for cell survival and requires efficient modifications in the pattern of gene expression. In this respect, a prominent example is Hsp70, a chaperone protein ...

• Academic Collaboration via Resource Contributions: An Egocentric Dataset 

  Bojanowski, Michał; Czerniawska, Dominika; Fenrich, Wojciech (Exeley, 2020)

  In order to understand scientists’ incentives to form collaborative relations, we have conducted a study looking into academically relevant resources, which scientists contribute into collaborations with others. The ...

• Bayesian inference of a non-local proliferation model 

  Szymańska, Zuzanna; Skrzeczkowski, Jakub; Miasojedow, Błażej; Gwiazda, Piotr (Royal Society Publishing, 2021)

  From a systems biology perspective, the majority of cancer models, although interesting and providing a qualitative explanation of some problems, have a major disadvantage in that they usually miss a genuine connection ...

• Praznik: High performance information-based feature selection 

  Kursa, Miron Bartosz (Elsevier, 2021)

  Information filters are an important class of feature selection methods. They bring together strong theoretical background, execution speed and high selection quality. The paper provides a brief review of said methods and ...

• Pro-inflammatory cytokines, but not brain- and extracellular matrix-derived proteins, are increased in the plasma following electrically induced kindling of seizures 

  Chmielewska, Natalia; Maciejak, Piotr; Osuch, Bartosz; Kursa, Miron Bartosz; Szyndler, Janusz (Springer Nature, 2021)

  Background The aim of the study was to evaluate the brain-derived proteins, extracellular matrix-derived protein and cytokines as potential peripheral biomarkers of different susceptibility to seizure development in an ...

• Relaying Aversive Ultrasonic Alarm Calls Depends on Previous Experience. Empathy, Social Buffering, or Panic? 

  Karwicka, Wiktoria; Wiatrowska, Marta; Kondrakiewicz, Kacper; Knapska, Ewelina; Kursa, Miron Bartosz; Hamed, Adam (MDPI, 2021)

  Ultrasonic vocalizations are among the oldest evolutionarily forms of animal communication. In order to study the communication patterns in an aversive social situation, we used a behavioral model in which one animal, the ...

• Sirtuin 1, Visfatin and IL-27 Serum Levels of Type 1 Diabetic Females in Relation to Cardiovascular Parameters and Autoimmune Thyroid Disease 

  Łukawska-Tatarczuk, Magdalena; Franek, Edward; Czupryniak, Leszek; Joniec-Maciejak, Ilona; Pawlak, Agnieszka; Wojnar, Ewa; Zieliński, Jakub; Mirowska-Guzel, Dagmara; Mrozikiewicz-Rakowska, Beata (MDPI, 2021)

  The loss of cardioprotection observed in premenopausal, diabetic women may result from the interplay between epigenetic, metabolic, and immunological factors. The aim of this study was to evaluate the concentration of ...

• A pre-registered short-term forecasting study of COVID-19 in Germany and Poland during the second wave 

  Bracher, Johannes; Wolffram, Daniel; Deuschel, Jannik; Görgen, Konstantin; Ketterer, Jakob L.; Ullrich, Alexander; Abbott, Sam; Barbarossa, Maria Vittoria; Bertsimas, Dimitris; Bhatia, Sangeeta; Bodych, Marcin; Bosse, Nikos I.; Burgard, Jan Pablo; Castro, Lauren; Fairchild, Geoffrey; Fuhrmann, Jan; Funk, Sebastian; Gogolewski, Krzysztof; Gu, Quanquan; Heyder, Stefan; Hotz, Thomas; Kheifetz, Yuri; Kirsten, Holger; Krueger, Tyll; Krymova, Ekaterina; Li, Michael Lingzhi; Meinke, Jan H.; Michaud, Isaac; Niedzielewski, Karol; Ożański, Tomasz; Rakowski, Franciszek; Scholz, Markus; Soni, Saksham; Srivastava, Ajitesh; Zielinski, Jakub; Zou, Difan; Gneiting, Tilmann; Schienle, Melanie (Springer Nature, 2021)

  Disease modelling has had considerable policy impact during the ongoing COVID-19 pandemic, and it is increasingly acknowledged that combining multiple models can improve the reliability of outputs. Here we report insights ...

• Mathematical modelling of collagen fibres rearrangement during the tendon healing process 

  Carrillo, José Antonio; Parisot, Martin; Szymańska, Zuzanna (American Institute of Mathematical Sciences, 2021)

  Tendon injuries present a clinical challenge to modern medicine as they heal slowly and rarely is there full restoration to healthy tendon structure and mechanical strength. Moreover, the process of healing is not fully ...

• Distinct characteristics of multisystem inflammatory syndrome in children in Poland 

  Ludwikowska, Kamila Maria; Okarska-Napierała, Magdalena; Dudek, Natalia; Tracewski, Paweł; Kusa, Jacek; Piwoński, Krzysztof Piotr; Afelt, Aneta; Cysewski, Dominik; Biela, Mateusz; Werner, Bożena; Jackowska, Teresa; Suski-Grabowski, Catherine; Kursa, Miron Bartosz; Kuchar, Ernest; Szenborn, Leszek (Springer Nature, 2021)

  During the winter months of 2020/2021 a wave of multisystem inflammatory syndrome in children (MIS-C) emerged in Poland. We present the results of a nationwide register aiming to capture and characterise MIS-C with a focus ...

• Terroryzm a COVID-19. Doświadczenia pierwszego roku pandemii 

  Grabowski, Tomasz (Akademia Ignatianum w Krakowie, 2021-12-31)

  CEL NAUKOWY: Celem artykułu jest odnalezienie i opis związków między pandemią COVID-19 a ewolucją terroryzmu w latach 2020–2021. PROBLEM I METODY BADAWCZE: Główny problem badawczy ujęto w formie pytania: jak pandemia ...

• Social deprivation substantially changes multi-structural neurotransmitter signature of social interaction: Glutamate concentration in amygdala and VTA as a key factor in social encounter-induced 50-kHz ultrasonic vocalization 

  Hamed, Adam; Kursa, Miron Bartosz (Elsevier, 2020)

  Ultrasonic vocalizations are important for coordinating social behavior in rats. Examination of the neurochemical mechanisms that govern social behavior and ultrasonic vocalization emission is crucial for understanding the ...

• Otwarty dostęp w krajach globalnego Południa 

  Glinicka, Małgorzata (Wydawnictwo Naukowe i Edukacyjne SBP, 2020)

  Cel/Teza: Artykuł referuje bieżący etap rozwoju otwartego dostępu w krajach globalnego Południa, ze wskazaniem podobieństw i odmienności pomiędzy różnymi obszarami świata, nakreśleniem specyfiki reprezentatywnych krajów ...

• Dziedzinowe Repozytoria Otwartych Danych Badawczych 

  Fenrich, Wojciech; Gruenpeter, Natalia (Stowarzyszenie EBIB, 2020-11-11)

  W artykule przedstawiono genezę, założenia, cele i planowane rezultaty projektu Dziedzinowe Repozytoria Otwartych Danych Badawczych. Autorzy charakteryzują dane opracowywane i udostępniane w ramach przedsięwzięcia. Omówiono ...

• e-Infrastruktura: preludium cyfrowej humanistyki 

  Starczewski, Michał (2015)

• Electronic transfer contribution in adsorption of silicon at SiC(0001) surface – density functional theory (DFT) study 

  Sołtys, Jakub; Piechota, Jacek; Krukowski, Stanisław (preprint, 2015)

  Physical properties of SiC(0001) surface under various coverage by Si adatoms was studied using density functional theory (DFT) calculations. The clean SiC(0001) surface has the Fermi level pinned by Si broken bond state ...

• Towards robust tags for scientific publications from natural language processing tools and Wikipedia 

  Łopuszyński, Michał; Bolikowski, Łukasz (Springer, 2015)

  In this work, two simple methods of tagging scientific publications with labels reflecting their content are presented and compared. As a first source of labels, Wikipedia is employed. A second label set is constructed from ...

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